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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xyn11FCarbohydrate binding domain protein; Identified by match to protein family HMM PF00457; match to protein family HMM PF02018; Belongs to the glycosyl hydrolase 11 (cellulase G) family. (540 aa)    
Predicted Functional Partners:
CUS_7715
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 
 0.902
CUS_5667
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331; match to protein family HMM PF02018.
 
   
 0.776
CUS_5264
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331.
 
     0.769
CUS_7090
Putative endoglucanase C; Identified by match to protein family HMM PF00759; match to protein family HMM PF02018; match to protein family HMM PF02927.
  
  
  0.769
CUS_6520
BNR/Asp-box repeat protein; Identified by match to protein family HMM PF02012.
  
     0.765
CUS_8100
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150.
  
  
 0.764
CUS_6227
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
 0.762
CUS_7783
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; match to protein family HMM PF00404; match to protein family HMM PF02018.
  
  
 0.761
CUS_5681
Mannan endo-1,4-beta-mannosidase domain protein; Identified by match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.
  
     0.757
CUS_6970
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; match to protein family HMM PF00404.
  
  
  0.754
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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