STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5153PASTA domain protein; Identified by match to protein family HMM PF03793. (1006 aa)    
Predicted Functional Partners:
CUS_6885
ABC-2 type transporter; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF01061.
  
 
 0.954
CUS_6884
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.946
CUS_4405
FHA domain protein; Identified by match to protein family HMM PF00498.
   
 
 0.926
CUS_5875
Clostripain family; Identified by match to protein family HMM PF03415.
   
 
 0.926
CUS_7179
Clostripain family; Identified by match to protein family HMM PF03415.
   
 
 0.926
CUS_7533
Protein phosphatase 2C; Identified by match to protein family HMM PF00481.
 
 0.911
CUS_5512
Hypothetical protein.
 
 0.909
CUS_5522
Hypothetical protein.
 
 0.909
CUS_5523
Protein phosphatase 2C; Identified by match to protein family HMM PF00481.
 
 0.909
CUS_5817
Putative serine/threonine phosphatase stp; Identified by match to protein family HMM PF00481.
 
 0.909
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.