STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5174Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (428 aa)    
Predicted Functional Partners:
CUS_5172
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   0.991
CUS_5171
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.
 
 
 0.986
CUS_5863
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   0.965
CUS_5173
Conserved domain protein.
 
  
 0.964
CUS_5507
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   0.955
CUS_6768
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   0.934
CUS_6753
Putative bacteriocin ABC transporter; Identified by match to protein family HMM PF00005.
 
   0.932
CUS_6473
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   0.931
CUS_5415
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   0.927
CUS_7751
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   0.924
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.