Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5176Putative stage 0 sporulation protein J; Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. (309 aa)    
Predicted Functional Partners:
soj
Sporulation initiation inhibitor protein Soj; Identified by match to protein family HMM PF01656.
 
 
 0.981
CUS_4758
CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656.
 
 
 0.940
CUS_5613
Putative sporulation initiation inhibitor protein Soj; Identified by match to protein family HMM PF01656.
 
 
 0.940
CUS_7732
Putative sporulation initiation inhibitor protein Soj; Identified by match to protein family HMM PF01656.
 
 
 0.940
CUS_4359
Sporulation initiation inhibitor protein Soj domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
 
 0.888
CUS_7768
Putative stage III sporulation protein E; Identified by match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family.
  
  
 0.740
rmsG
16S rRNA (guanine(527)-N(7))-methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.666
CUS_5175
Identified by match to protein family HMM PF00188.
       0.574
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
  
 0.530
CUS_5178
Putative nucleoid occlusion protein; Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family.
 
    
0.527
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.