CUS_5236 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_5236

Putative spore germination protein KA; Identified by match to protein family HMM PF03323. (488 aa)

Predicted Functional Partners:

CUS_5239

0.865

spoVAD

0.799

spoVAC

0.789

CUS_5966

0.788

spoVAE

0.782

spoIVA

0.774

spoIVB

0.774

gpr

0.773

CUS_6320

0.772

sigE

0.771

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_5236	CUS_5239	CUS_5236	CUS_5239	Putative spore germination protein KA; Identified by match to protein family HMM PF03323.	Germination protein, Ger(x)C family.	0.865
CUS_5236	CUS_5966	CUS_5236	CUS_5966	Putative spore germination protein KA; Identified by match to protein family HMM PF03323.	Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.	0.788
CUS_5236	CUS_6320	CUS_5236	CUS_6320	Putative spore germination protein KA; Identified by match to protein family HMM PF03323.	Putative stage V sporulation protein T; Identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439.	0.772
CUS_5236	gpr	CUS_5236	CUS_5691	Putative spore germination protein KA; Identified by match to protein family HMM PF03323.	Putative GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.	0.773
CUS_5236	sigE	CUS_5236	CUS_6718	Putative spore germination protein KA; Identified by match to protein family HMM PF03323.	RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.771
CUS_5236	spoIVA	CUS_5236	CUS_7585	Putative spore germination protein KA; Identified by match to protein family HMM PF03323.	Stage IV sporulation protein A; Identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836.	0.774
CUS_5236	spoIVB	CUS_5236	CUS_8007	Putative spore germination protein KA; Identified by match to protein family HMM PF03323.	SpoIVB peptidase; Identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860.	0.774
CUS_5236	spoVAC	CUS_5236	CUS_5741	Putative spore germination protein KA; Identified by match to protein family HMM PF03323.	Stage V sporulation protein AC; Identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838.	0.789
CUS_5236	spoVAD	CUS_5236	CUS_4575	Putative spore germination protein KA; Identified by match to protein family HMM PF03323.	Stage V sporulation protein AD; Identified by match to protein family HMM PF07451.	0.799
CUS_5236	spoVAE	CUS_5236	CUS_4576	Putative spore germination protein KA; Identified by match to protein family HMM PF03323.	Stage V sporulation protein AE; Identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839.	0.782
CUS_5239	CUS_5236	CUS_5239	CUS_5236	Germination protein, Ger(x)C family.	Putative spore germination protein KA; Identified by match to protein family HMM PF03323.	0.865
CUS_5966	CUS_5236	CUS_5966	CUS_5236	Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.	Putative spore germination protein KA; Identified by match to protein family HMM PF03323.	0.788
CUS_5966	CUS_6320	CUS_5966	CUS_6320	Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.	Putative stage V sporulation protein T; Identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439.	0.843
CUS_5966	gpr	CUS_5966	CUS_5691	Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.	Putative GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.	0.771
CUS_5966	sigE	CUS_5966	CUS_6718	Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.	RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.896
CUS_5966	spoIVA	CUS_5966	CUS_7585	Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.	Stage IV sporulation protein A; Identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836.	0.840
CUS_5966	spoIVB	CUS_5966	CUS_8007	Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.	SpoIVB peptidase; Identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860.	0.774
CUS_5966	spoVAC	CUS_5966	CUS_5741	Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.	Stage V sporulation protein AC; Identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838.	0.775
CUS_5966	spoVAD	CUS_5966	CUS_4575	Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.	Stage V sporulation protein AD; Identified by match to protein family HMM PF07451.	0.774
CUS_5966	spoVAE	CUS_5966	CUS_4576	Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.	Stage V sporulation protein AE; Identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839.	0.774