STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5239Germination protein, Ger(x)C family. (374 aa)    
Predicted Functional Partners:
CUS_5237
Putative membrane protein.
  
  
 0.866
CUS_5236
Putative spore germination protein KA; Identified by match to protein family HMM PF03323.
 
  
 0.847
ypeB
Germination protein YpeB; Identified by match to protein family HMM TIGR02889.
 
   
 0.589
CUS_7810
Putative stage III sporulation protein AE.
  
     0.567
CUS_6067
Hypothetical protein; Identified by glimmer; putative.
  
    0.537
CUS_6734
Putative lipoprotein.
  
     0.509
CUS_6106
Putative spore cortex-lytic enzyme; Identified by match to protein family HMM PF01471; match to protein family HMM PF07486.
  
  
 0.497
CUS_5781
Conserved domain protein; Belongs to the UPF0342 family.
  
     0.472
CUS_6749
Putative membrane protein.
  
     0.466
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.