Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5252Hypothetical protein. (253 aa)    
Predicted Functional Partners:
CUS_5429
FMN-binding domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF04205; match to protein family HMM PF07581.
  
     0.661
CUS_7149
Putative lipoprotein.
  
     0.550
CUS_7179
Clostripain family; Identified by match to protein family HMM PF03415.
  
     0.486
CUS_5527
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
  
     0.446
CUS_5734
FkbH domain protein; Identified by match to protein family HMM TIGR01681; match to protein family HMM TIGR01686.
  
     0.445
CUS_5662
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041.
  
     0.437
CUS_4994
Hypothetical protein.
  
     0.435
CUS_4594
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.431
CUS_7919
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.423
CUS_5883
Putative lipoprotein.
  
     0.408
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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