Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5294Identified by match to protein family HMM PF04239. (225 aa)    
Predicted Functional Partners:
CUS_5295
Hypothetical protein; Identified by glimmer; putative.
       0.773
ytfJ
Sporulation protein YtfJ; Identified by match to protein family HMM PF09579; match to protein family HMM TIGR02874.
  
     0.728
CUS_5236
Putative spore germination protein KA; Identified by match to protein family HMM PF03323.
 
   
 0.726
spoIVA
Stage IV sporulation protein A; Identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836.
  
     0.711
spoVAD
Stage V sporulation protein AD; Identified by match to protein family HMM PF07451.
 
  
 0.698
CUS_5966
Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.
  
     0.689
spoVAC
Stage V sporulation protein AC; Identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838.
 
  
 0.682
spoVAE
Stage V sporulation protein AE; Identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839.
 
  
 0.665
spoIVB
SpoIVB peptidase; Identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860.
  
     0.651
CUS_7810
Putative stage III sporulation protein AE.
  
     0.649
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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