Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_5308Conserved domain protein. (200 aa)    
Predicted Functional Partners:
CUS_4920
DnaD domain protein; Identified by match to protein family HMM PF04271; match to protein family HMM TIGR01446.
  
     0.693
CUS_7587
Conserved domain protein.
  
     0.647
CUS_7601
Hypothetical protein; Identified by glimmer; putative.
  
     0.609
CUS_7602
Hypothetical protein; Identified by glimmer; putative.
  
     0.595
CUS_7605
Hypothetical protein; Identified by glimmer; putative.
  
     0.585
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
       0.584
CUS_7010
Hypothetical protein.
  
     0.574
CUS_8050
TIGR04002 family protein.
  
     0.562
CUS_7497
Hypothetical protein.
  
     0.538
CUS_5786
Conserved domain protein.
  
     0.536
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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