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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5322Fibronectin type III domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM TIGR02167. (557 aa)    
Predicted Functional Partners:
CUS_6698
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297; match to protein family HMM PF09223.
  
  
 0.642
CUS_5255
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF02368.
  
     0.482
CUS_7363
Hypothetical protein.
  
     0.482
CUS_6191
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.481
CUS_8119
Dockerin type I repeat protein.
  
     0.459
CUS_5556
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.
  
     0.458
CUS_5875
Clostripain family; Identified by match to protein family HMM PF03415.
  
     0.424
CUS_6911
Putative phage head-tail adaptor; Identified by match to protein family HMM PF00404.
  
     0.424
CUS_7994
Conserved domain protein.
  
     0.424
CUS_6809
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.407
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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