Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_5336Putative glycerol-3-phosphate cytidylyltransferase; Identified by match to protein family HMM PF01408; match to protein family HMM PF01467; match to protein family HMM TIGR00125. (424 aa)    
Predicted Functional Partners:
CUS_5335
Identified by match to protein family HMM PF04991.
 
     0.918
CUS_5333
Identified by match to protein family HMM PF04991.
 
     0.899
CUS_4944
GHMP kinase, N-terminal domain protein; Identified by match to protein family HMM PF00288; Belongs to the GHMP kinase family.
  
 0.872
CUS_5646
AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.
  
 
 0.837
lysS
lysine--tRNA ligase; Identified by match to protein family HMM PF00152; match to protein family HMM PF00587; match to protein family HMM PF01336; match to protein family HMM TIGR00499; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.796
CUS_7288
NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993.
 
 
 0.790
CUS_7620
CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; Identified by match to protein family HMM PF04464.
 
  
 0.783
CUS_5338
Identified by match to protein family HMM PF04991.
 
     0.765
CUS_5337
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
 
  
 0.747
CUS_7200
Identified by match to protein family HMM PF01261.
  
 
 0.737
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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