Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5338Identified by match to protein family HMM PF04991. (258 aa)    
Predicted Functional Partners:
CUS_5339
HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM PF02655; match to protein family HMM TIGR01549.
       0.773
CUS_5340
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
       0.773
CUS_5336
Putative glycerol-3-phosphate cytidylyltransferase; Identified by match to protein family HMM PF01408; match to protein family HMM PF01467; match to protein family HMM TIGR00125.
 
     0.765
CUS_5341
Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
       0.747
CUS_5337
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
       0.712
CUS_5333
Identified by match to protein family HMM PF04991.
 
    
0.527
CUS_5335
Identified by match to protein family HMM PF04991.
 
    
0.525
CUS_5330
O-antigen polymerase; Identified by match to protein family HMM PF04932.
    
  0.423
CUS_5332
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
    
  0.422
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.