Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CUS_5340Bacterial sugar transferase; Identified by match to protein family HMM PF02397. (247 aa)    
Predicted Functional Partners:
CUS_6335
Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.
  
 
 0.936
CUS_5341
Identified by match to protein family HMM PF01041; match to protein family HMM PF01212; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.929
CUS_4807
Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; Identified by match to protein family HMM TIGR03570.
    0.875
CUS_5339
HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM PF02655; match to protein family HMM TIGR01549.
   
 0.853
CUS_8054
Capsular exopolysaccharide family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01007.
 
 
 0.833
CUS_5338
Identified by match to protein family HMM PF04991.
       0.773
CUS_6867
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719.
 
 
 0.752
CUS_4809
Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.737
CUS_5337
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
  
    0.703
CUS_5332
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
 
 0.617
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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