Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CUS_5344 | CUS_5345 | CUS_5344 | CUS_5345 | Putative phosphinothricin N-acetyltransferase; Identified by match to protein family HMM PF00583. | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.505 |
| CUS_5344 | CUS_7787 | CUS_5344 | CUS_7787 | Putative phosphinothricin N-acetyltransferase; Identified by match to protein family HMM PF00583. | Putative methionine synthase; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607. | 0.695 |
| CUS_5344 | mprF | CUS_5344 | CUS_7238 | Putative phosphinothricin N-acetyltransferase; Identified by match to protein family HMM PF00583. | Putative membrane protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.550 |
| CUS_5344 | ureA | CUS_5344 | CUS_4995 | Putative phosphinothricin N-acetyltransferase; Identified by match to protein family HMM PF00583. | Urease, gamma subunit; Identified by match to protein family HMM PF00547; match to protein family HMM PF00699; match to protein family HMM TIGR00192; match to protein family HMM TIGR00193; Belongs to the urease gamma subunit family. | 0.402 |
| CUS_5345 | CUS_5344 | CUS_5345 | CUS_5344 | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Putative phosphinothricin N-acetyltransferase; Identified by match to protein family HMM PF00583. | 0.505 |
| CUS_5345 | ureA | CUS_5345 | CUS_4995 | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Urease, gamma subunit; Identified by match to protein family HMM PF00547; match to protein family HMM PF00699; match to protein family HMM TIGR00192; match to protein family HMM TIGR00193; Belongs to the urease gamma subunit family. | 0.664 |
| CUS_7787 | CUS_5344 | CUS_7787 | CUS_5344 | Putative methionine synthase; Identified by match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607. | Putative phosphinothricin N-acetyltransferase; Identified by match to protein family HMM PF00583. | 0.695 |
| mprF | CUS_5344 | CUS_7238 | CUS_5344 | Putative membrane protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | Putative phosphinothricin N-acetyltransferase; Identified by match to protein family HMM PF00583. | 0.550 |
| ureA | CUS_5344 | CUS_4995 | CUS_5344 | Urease, gamma subunit; Identified by match to protein family HMM PF00547; match to protein family HMM PF00699; match to protein family HMM TIGR00192; match to protein family HMM TIGR00193; Belongs to the urease gamma subunit family. | Putative phosphinothricin N-acetyltransferase; Identified by match to protein family HMM PF00583. | 0.402 |
| ureA | CUS_5345 | CUS_4995 | CUS_5345 | Urease, gamma subunit; Identified by match to protein family HMM PF00547; match to protein family HMM PF00699; match to protein family HMM TIGR00192; match to protein family HMM TIGR00193; Belongs to the urease gamma subunit family. | Conserved domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.664 |