Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5350Resolvase, N-terminal domain protein; Identified by match to protein family HMM PF00239. (257 aa)    
Predicted Functional Partners:
CUS_7736
TnpX site-specific recombinase domain protein; Identified by match to protein family HMM PF07508.
  
     0.758
CUS_4294
Recombinase; Identified by match to protein family HMM PF07508.
  
     0.756
CUS_5119
Resolvase, N-terminal domain protein; Identified by match to protein family HMM PF00239.
  
     0.684
CUS_4291
Putative TnpX site-specific recombinase; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.
  
     0.671
CUS_5888
Putative TnpX site-specific recombinase; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.
  
     0.670
CUS_4869
Resolvase, N-terminal domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00239.
  
     0.660
CUS_5937
Putative TnpX site-specific recombinase; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.
  
     0.655
CUS_4540
Putative TnpX site-specific recombinase; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.
  
     0.653
CUS_5349
Hypothetical protein; Identified by glimmer; putative.
       0.580
CUS_6649
Recombinase; Identified by match to protein family HMM PF07508.
  
     0.504
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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