Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5385YbbR-like protein. (448 aa)    
Predicted Functional Partners:
dacA
TIGR00159 family protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
  
  
 0.929
CUS_5781
Conserved domain protein; Belongs to the UPF0342 family.
  
     0.750
CUS_5546
Conserved domain protein.
 
     0.747
CUS_6629
Hypothetical protein.
  
     0.746
CUS_6734
Putative lipoprotein.
  
     0.741
CUS_5786
Conserved domain protein.
  
     0.736
CUS_6749
Putative membrane protein.
  
     0.730
CUS_8123
Hypothetical protein; Identified by glimmer; putative.
  
     0.727
CUS_6925
Conserved domain protein.
  
     0.714
CUS_7587
Conserved domain protein.
  
     0.710
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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