STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5414Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (838 aa)    
Predicted Functional Partners:
CUS_5415
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.954
CUS_5413
Beta-lactamase; Identified by match to protein family HMM PF00144.
 
     0.826
CUS_5416
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
     0.797
CUS_7751
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
   0.737
CUS_6098
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
   0.713
CUS_5744
Conserved domain protein.
  
     0.657
CUS_6895
Conserved domain protein.
  
     0.653
CUS_8108
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
    0.644
CUS_5005
Conserved domain protein; Overlaps another CDS with the same product name.
  
     0.641
CUS_6610
GDSL-like protein.
  
     0.641
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: medium (54%) [HD]