STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5429FMN-binding domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM PF04205; match to protein family HMM PF07581. (1552 aa)    
Predicted Functional Partners:
CUS_7882
Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228.
  
     0.759
CUS_5603
Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.
  
     0.741
CUS_4594
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.736
CUS_7179
Clostripain family; Identified by match to protein family HMM PF03415.
  
     0.718
CUS_5194
Relaxase/mobilization nuclease domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03432.
  
     0.715
CUS_7883
Hypothetical protein.
  
     0.699
CUS_5084
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.
  
    0.680
CUS_8108
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
    0.670
CUS_5252
Hypothetical protein.
  
     0.661
CUS_6610
GDSL-like protein.
  
     0.647
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.