STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5447ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (580 aa)    
Predicted Functional Partners:
CUS_5448
Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
 
     0.894
CUS_5449
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
     0.874
CUS_5446
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
    
0.823
CUS_5450
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
   
  0.796
CUS_5451
ABC transporter, ATP-binding family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
       0.741
CUS_7094
Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
  
     0.667
CUS_4433
Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
  
     0.618
CUS_5645
Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
  
 0.618
CUS_5445
Identified by match to protein family HMM PF01648; Belongs to the P-Pant transferase superfamily.
       0.603
CUS_4434
Cobalt transport protein; Identified by match to protein family HMM PF02361.
  
     0.528
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (20%) [HD]