STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5448Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185. (194 aa)    
Predicted Functional Partners:
CUS_5449
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
     0.946
CUS_5446
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
     0.906
CUS_5447
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.894
CUS_5450
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
 
    0.815
CUS_5451
ABC transporter, ATP-binding family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
 
     0.804
CUS_5581
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
     0.770
CUS_4435
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
     0.769
CUS_4434
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
     0.768
CUS_5641
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
     0.761
CUS_5431
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.727
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.