STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5451ABC transporter, ATP-binding family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error. (83 aa)    
Predicted Functional Partners:
CUS_5449
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
 0.925
CUS_5448
Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
 
     0.804
CUS_5450
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
 
  
 
0.776
CUS_5446
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
       0.741
CUS_5447
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.741
CUS_6815
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.730
CUS_6814
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.699
CUS_4434
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
 0.660
CUS_6813
Putative dipeptide ABC transporter, ATP-binding protein DppD; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005.
  
 
 0.608
CUS_5445
Identified by match to protein family HMM PF01648; Belongs to the P-Pant transferase superfamily.
       0.580
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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