STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5482Hypothetical protein. (80 aa)    
Predicted Functional Partners:
CUS_4659
Putative protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
 
 0.999
hymB
Protein HymB; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00037; match to protein family HMM PF01512.
  
 0.998
CUS_4661
Ferredoxin hydrogenase; Identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF02256; match to protein family HMM PF02906; match to protein family HMM TIGR02512.
  
 0.988
CUS_5480
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF04060.
 
 
 0.983
CUS_4932
Ferredoxin; Identified by match to protein family HMM PF00037.
  
 0.969
CUS_5478
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02906.
 
 
 0.958
CUS_5479
Stage II sporulation protein E; Identified by match to protein family HMM PF07228.
 
    0.948
CUS_5977
Peptidase M16 inactive domain protein; Identified by match to protein family HMM PF05193; overlaps another CDS with the same product name.
   
   0.890
CUS_5978
Peptidase M16 inactive domain protein; Identified by match to protein family HMM PF00675; match to protein family HMM PF05193; overlaps another CDS with the same product name.
   
   0.890
CUS_4425
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.
   
 0.878
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.