CUS_5487 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CUS_5487

Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family. (309 aa)

Predicted Functional Partners:

CUS_4399

0.581

CUS_5486

0.572

CUS_5479

0.559

CUS_5482

0.558

CUS_5481

0.553

CUS_5480

0.541

CUS_5483

0.527

adhE

0.499

CUS_5478

0.473

rex

0.467

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_4399	CUS_5487	CUS_4399	CUS_5487	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.	0.581
CUS_5478	CUS_5479	CUS_5478	CUS_5479	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02906.	Stage II sporulation protein E; Identified by match to protein family HMM PF07228.	0.904
CUS_5478	CUS_5480	CUS_5478	CUS_5480	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02906.	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF04060.	0.827
CUS_5478	CUS_5481	CUS_5478	CUS_5481	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02906.	Hypothetical protein.	0.942
CUS_5478	CUS_5482	CUS_5478	CUS_5482	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02906.	Hypothetical protein.	0.943
CUS_5478	CUS_5483	CUS_5478	CUS_5483	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02906.	Phosphotransferase enzyme family; Identified by match to protein family HMM PF01636.	0.772
CUS_5478	CUS_5487	CUS_5478	CUS_5487	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02906.	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.	0.473
CUS_5478	adhE	CUS_5478	CUS_5484	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02906.	Aldehyde-alcohol dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.	0.695
CUS_5478	rex	CUS_5478	CUS_5485	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02906.	CoA binding domain protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.	0.639
CUS_5479	CUS_5478	CUS_5479	CUS_5478	Stage II sporulation protein E; Identified by match to protein family HMM PF07228.	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02906.	0.904
CUS_5479	CUS_5480	CUS_5479	CUS_5480	Stage II sporulation protein E; Identified by match to protein family HMM PF07228.	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF04060.	0.957
CUS_5479	CUS_5481	CUS_5479	CUS_5481	Stage II sporulation protein E; Identified by match to protein family HMM PF07228.	Hypothetical protein.	0.947
CUS_5479	CUS_5482	CUS_5479	CUS_5482	Stage II sporulation protein E; Identified by match to protein family HMM PF07228.	Hypothetical protein.	0.947
CUS_5479	CUS_5483	CUS_5479	CUS_5483	Stage II sporulation protein E; Identified by match to protein family HMM PF07228.	Phosphotransferase enzyme family; Identified by match to protein family HMM PF01636.	0.828
CUS_5479	CUS_5487	CUS_5479	CUS_5487	Stage II sporulation protein E; Identified by match to protein family HMM PF07228.	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; Belongs to the LysR transcriptional regulatory family.	0.559
CUS_5479	adhE	CUS_5479	CUS_5484	Stage II sporulation protein E; Identified by match to protein family HMM PF07228.	Aldehyde-alcohol dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM PF00465; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.	0.763
CUS_5479	rex	CUS_5479	CUS_5485	Stage II sporulation protein E; Identified by match to protein family HMM PF07228.	CoA binding domain protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.	0.675
CUS_5480	CUS_5478	CUS_5480	CUS_5478	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF04060.	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02906.	0.827
CUS_5480	CUS_5479	CUS_5480	CUS_5479	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF04060.	Stage II sporulation protein E; Identified by match to protein family HMM PF07228.	0.957
CUS_5480	CUS_5481	CUS_5480	CUS_5481	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF04060.	Hypothetical protein.	0.975