Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5495Putative lipoprotein. (196 aa)    
Predicted Functional Partners:
CUS_5496
ABC 3 transport family protein; Identified by match to protein family HMM PF00950.
 
     0.953
CUS_5497
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.946
CUS_5498
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297.
 
     0.928
CUS_5499
Hypothetical protein; Belongs to the Fur family.
 
     0.838
CUS_6698
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297; match to protein family HMM PF09223.
 
     0.820
CUS_4298
Methyltransferase domain protein; Identified by match to protein family HMM PF02390; match to protein family HMM PF08241; match to protein family HMM PF08242.
  
     0.405
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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