STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5496ABC 3 transport family protein; Identified by match to protein family HMM PF00950. (300 aa)    
Predicted Functional Partners:
CUS_5497
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.999
CUS_6698
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297; match to protein family HMM PF09223.
 
 
 0.999
CUS_5498
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297.
 
 
 0.993
CUS_5495
Putative lipoprotein.
 
     0.955
CUS_5499
Hypothetical protein; Belongs to the Fur family.
 
  
 0.935
CUS_7972
Putative arginine ABC transporter, permease protein ArtQ; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
   
 
 0.566
CUS_5383
Iron dependent repressor, N-terminal DNA binding domain protein; Identified by match to protein family HMM PF01325; match to protein family HMM PF02742.
  
 
 0.546
CUS_6738
Iron dependent repressor, N-terminal DNA binding domain protein; Identified by match to protein family HMM PF01325.
  
 
 0.546
CUS_7924
Putative iron-only hydrogenase system regulator; Identified by match to protein family HMM TIGR03959.
    
 0.518
CUS_5256
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02687.
  
 
 0.491
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.