STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5514Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482. (303 aa)    
Predicted Functional Partners:
CUS_5513
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437.
 
  
 0.970
CUS_5515
Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.
 
     0.959
CUS_4405
FHA domain protein; Identified by match to protein family HMM PF00498.
 
     0.697
CUS_5517
Peptidase, A24 family; Identified by match to protein family HMM PF01478.
 
   
 0.645
CUS_5516
Hypothetical protein; Identified by glimmer; putative.
       0.603
CUS_5104
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
    0.517
CUS_5287
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
    0.517
CUS_5518
Identified by match to protein family HMM PF07656.
 
     0.503
CUS_5427
Cyclic diguanylate phosphodiesterase (EAL) domain protein; Identified by match to protein family HMM PF00563.
   
    0.485
CUS_5574
Conserved domain protein.
 
     0.469
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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