STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5534Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01943; match to protein family HMM PF03023. (555 aa)    
Predicted Functional Partners:
CUS_6352
Identified by match to protein family HMM PF04816.
  
     0.712
CUS_7020
Identified by match to protein family HMM PF06135; Belongs to the UPF0297 family.
  
     0.672
CUS_7789
Putative ATP-dependent nuclease subunit B; ATP-dependent DNA helicase.
  
     0.597
CUS_6320
Putative stage V sporulation protein T; Identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439.
 
   
 0.498
CUS_7790
Putative ATP-dependent nuclease subunit A; ATP-dependent DNA helicase.
  
     0.480
CUS_5203
Helix-turn-helix protein, YlxM/p13 family; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.470
mrnC
RNase3 domain protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.
  
     0.455
CUS_5789
S4 domain protein; Identified by match to protein family HMM PF01479.
  
     0.439
CUS_6623
Putative fibronectin-binding protein; Identified by match to protein family HMM PF05670; match to protein family HMM PF05833.
  
   
 0.433
CUS_6106
Putative spore cortex-lytic enzyme; Identified by match to protein family HMM PF01471; match to protein family HMM PF07486.
  
     0.427
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.