STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5581ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (460 aa)    
Predicted Functional Partners:
CUS_4434
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
 0.915
CUS_5449
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
  0.914
CUS_7094
Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
 
     0.780
CUS_4433
Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
 
     0.779
CUS_5448
Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
  
     0.770
CUS_6813
Putative dipeptide ABC transporter, ATP-binding protein DppD; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005.
 
 
0.720
CUS_7319
Conserved domain protein; Overlaps another CDS with the same product name.
 
 0.711
CUS_8128
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
 0.692
CUS_5582
DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381.
 
     0.588
CUS_5431
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.573
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.