Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CUS_5587Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (764 aa)    
Predicted Functional Partners:
CUS_5588
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.958
CUS_7472
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.855
CUS_7112
ABC transporter, ATP-binding protein.
 
   0.774
CUS_7084
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.772
CUS_5256
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02687.
  
   0.589
CUS_5836
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.490
CUS_6098
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
   0.474
CUS_5415
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
   0.471
CUS_8112
Heptaprenyl diphosphate synthase component I; Identified by match to protein family HMM PF07456.
  
     0.467
CUS_5586
DHH family protein; Identified by match to protein family HMM PF01368.
  
    0.438
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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