Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5602Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (204 aa)    
Predicted Functional Partners:
CUS_5448
Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
  
     0.637
CUS_7094
Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
  
     0.625
CUS_4433
Conserved hypothetical integral membrane protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
  
     0.615
CUS_6817
ABC transporter, ATP-binding protein.
  
     0.610
CUS_6816
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
     0.600
CUS_4559
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
     0.599
CUS_7091
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
     0.598
CUS_4434
Cobalt transport protein; Identified by match to protein family HMM PF02361.
  
     0.597
CUS_7092
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
  
     0.597
CUS_4368
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
  
     0.580
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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