STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5614Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. (297 aa)    
Predicted Functional Partners:
CUS_5613
Putative sporulation initiation inhibitor protein Soj; Identified by match to protein family HMM PF01656.
 
 
 0.922
CUS_5615
Hypothetical protein; Identified by glimmer; putative.
       0.773
CUS_5616
Conserved domain protein.
       0.773
CUS_5617
Hypothetical protein.
       0.773
CUS_7312
Conserved domain protein.
    
 
 0.737
CUS_7732
Putative sporulation initiation inhibitor protein Soj; Identified by match to protein family HMM PF01656.
 
 
 0.678
soj
Sporulation initiation inhibitor protein Soj; Identified by match to protein family HMM PF01656.
 
 
 0.671
CUS_4758
CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656.
 
 
 0.670
CUS_4359
Sporulation initiation inhibitor protein Soj domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
 
 0.659
rmsG
16S rRNA (guanine(527)-N(7))-methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.640
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.