STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5631Identified by match to protein family HMM PF04365. (96 aa)    
Predicted Functional Partners:
CUS_5632
Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein.
 
   0.994
vapC
PIN domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.677
CUS_4455
Identified by match to protein family HMM PF04014.
  
     0.659
CUS_5629
Conserved domain protein.
       0.620
CUS_5630
Hypothetical protein; Identified by glimmer; putative.
       0.620
CUS_4756
Toxin-antitoxin system, toxin component, PIN family.
  
   
 0.563
CUS_5627
Identified by match to protein family HMM TIGR01987.
 
     0.421
CUS_4649
Hypothetical protein.
  
     0.407
CUS_7447
Identified by match to protein family HMM PF05685.
  
     0.402
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.