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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5679Carbohydrate binding domain protein; Identified by match to protein family HMM PF02018; match to protein family HMM PF03422; match to protein family HMM PF04616. (740 aa)    
Predicted Functional Partners:
ara51a
Alpha-L-arabinofuranosidase C-terminal domain protein; Identified by match to protein family HMM PF06964.
 
  
 0.898
CUS_4654
Putative esterase; Identified by match to protein family HMM PF00756.
 
  
 0.867
CUS_6968
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.
 
 
 0.842
CUS_7029
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
  
0.824
CUS_7675
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.806
CUS_6227
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.805
CUS_6389
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150.
 
  
 0.805
CUS_7654
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.805
CUS_8100
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150.
 
  
 0.805
CUS_7783
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; match to protein family HMM PF00404; match to protein family HMM PF02018.
 
  
 0.801
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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