STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5701Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025. (495 aa)    
Predicted Functional Partners:
CUS_6335
Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.
  
 
 0.935
CUS_8054
Capsular exopolysaccharide family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01007.
 
 
 0.795
CUS_5702
Identified by match to protein family HMM PF00899.
       0.709
CUS_6343
Conserved domain protein.
  
  
 0.532
CUS_7423
Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
  
 0.509
CUS_6070
Putative amylovoran biosynthesis glycosyltransferase AmsE; Identified by match to protein family HMM PF00535.
 
  
 0.501
CUS_8055
Chain length determinant protein; Identified by match to protein family HMM PF02706.
 
  
 0.487
CUS_6867
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719.
  
 
 0.409
CUS_6163
Nucleotide-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.408
CUS_6341
Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
 
 0.402
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.