STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5745Hypothetical protein; Identified by glimmer; putative. (52 aa)    
Predicted Functional Partners:
CUS_5746
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
       0.709
CUS_5744
Conserved domain protein.
       0.515
CUS_5742
Transcriptional regulator, PadR family; Identified by match to protein family HMM PF03551.
       0.499
CUS_5743
Hypothetical protein.
       0.499
CUS_5747
Conserved domain protein.
       0.420
CUS_5748
Flavin reductase; Identified by match to protein family HMM PF03358.
       0.420
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.