STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5765Bacterial stress protein; Identified by match to protein family HMM PF02342. (217 aa)    
Predicted Functional Partners:
CUS_5762
Conserved domain protein.
 
    0.915
CUS_5763
Toxic anion resistance protein TelA; Identified by match to protein family HMM PF05816; Belongs to the TelA family.
 
  
 0.911
CUS_5764
Bacterial stress protein; Identified by match to protein family HMM PF02342.
 
   
0.880
CUS_5768
Hypothetical protein.
 
     0.859
CUS_5767
Hypothetical protein.
 
     0.857
CUS_5769
HAD hydrolase, family IIB.
 
     0.852
CUS_7630
Hypothetical protein.
 
     0.818
CUS_4909
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
     0.799
CUS_5048
Bacterial stress protein; Identified by match to protein family HMM PF02342.
  
     0.774
CUS_7909
Conserved domain protein.
 
     0.769
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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