STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5774CotH protein; Identified by match to protein family HMM PF08757. (689 aa)    
Predicted Functional Partners:
CUS_4893
Dockerin type I repeat protein; Identified by match to protein family HMM PF08757.
  
     0.515
CUS_4675
SH3 domain protein; Identified by match to protein family HMM PF01551; match to protein family HMM PF08239.
  
 
 0.500
CUS_6968
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.
  
     0.490
CUS_7835
CotH protein; Identified by match to protein family HMM PF08757.
  
     0.482
CUS_6191
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
 
   0.469
CUS_6809
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
 
   0.463
CUS_7780
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041.
  
     0.462
CUS_6741
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.457
CUS_7678
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.454
CUS_7179
Clostripain family; Identified by match to protein family HMM PF03415.
  
     0.446
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.