STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5786Conserved domain protein. (409 aa)    
Predicted Functional Partners:
CUS_6394
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.
  
 0.891
CUS_5788
Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA.
 
     0.877
CUS_5790
DivIVA domain protein; Identified by match to protein family HMM PF05103; match to protein family HMM TIGR03544.
 
     0.854
CUS_5787
Pyridoxal phosphate enzyme, YggS family; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.828
CUS_5789
S4 domain protein; Identified by match to protein family HMM PF01479.
       0.828
CUS_5781
Conserved domain protein; Belongs to the UPF0342 family.
 
     0.823
hfq
RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
     
 0.799
CUS_5503
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
 
 0.789
CUS_6925
Conserved domain protein.
  
 
   0.789
CUS_7471
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM PF06696.
  
 
 0.789
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.