STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5802Identified by match to protein family HMM PF00633. (292 aa)    
Predicted Functional Partners:
CUS_7963
Type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.
  
  
 0.825
CUS_7956
Putative general secretion pathway protein E; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157.
  
  
 0.817
cbg
Beta-glucosidase; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915; Belongs to the glycosyl hydrolase 3 family.
  
    0.790
CUS_5804
Conserved domain protein.
       0.780
CUS_5805
Identified by match to protein family HMM PF02639; Belongs to the UPF0178 family.
       0.773
CUS_5806
Hypothetical protein.
       0.773
CUS_4480
Hypothetical protein.
  
     0.714
CUS_4523
Hypothetical protein.
  
     0.714
CUS_4913
Identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360.
  
  
 0.665
CUS_5517
Peptidase, A24 family; Identified by match to protein family HMM PF01478.
   
  
 0.654
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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