STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbgBeta-glucosidase; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915; Belongs to the glycosyl hydrolase 3 family. (754 aa)    
Predicted Functional Partners:
CUS_7124
Glycosyl hydrolase family 3 C-terminal domain protein; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
  
  
 
0.933
CUS_7631
Glycosyl hydrolase family 3 N-terminal domain protein; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915; Belongs to the glycosyl hydrolase 3 family.
  
  
 
0.932
CUS_6564
Glycosyltransferase family 36; Identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205.
 
  
 0.904
CUS_4551
Glycosyl hydrolase, family 31; Identified by match to protein family HMM PF01055; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.849
CUS_5802
Identified by match to protein family HMM PF00633.
  
    0.791
CUS_5804
Conserved domain protein.
       0.773
CUS_5805
Identified by match to protein family HMM PF02639; Belongs to the UPF0178 family.
       0.773
CUS_5806
Hypothetical protein.
       0.773
CUS_6741
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
  0.765
CUS_7967
Glycosyltransferase family 36; Identified by match to protein family HMM PF06165; match to protein family HMM PF06204; match to protein family HMM PF06205.
 
  
 0.756
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.