STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5806Hypothetical protein. (201 aa)    
Predicted Functional Partners:
CUS_5802
Identified by match to protein family HMM PF00633.
       0.773
cbg
Beta-glucosidase; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915; Belongs to the glycosyl hydrolase 3 family.
       0.773
CUS_5804
Conserved domain protein.
       0.773
CUS_5805
Identified by match to protein family HMM PF02639; Belongs to the UPF0178 family.
       0.773
CUS_8123
Hypothetical protein; Identified by glimmer; putative.
  
     0.607
CUS_7290
Conserved domain protein.
  
     0.595
CUS_4915
Putative ribonuclease M5; Identified by match to protein family HMM PF01751.
 
   
 0.544
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay.
      
 0.481
CUS_5807
HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.
       0.453
CUS_6076
Putative membrane protein.
  
     0.441
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.