Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5822Identified by match to protein family HMM PF04203. (221 aa)    
Predicted Functional Partners:
CUS_5823
LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM TIGR01167.
 
   
 0.928
CUS_6668
LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM TIGR01167.
 
   
 0.580
CUS_6669
Sortase family protein.
 
     0.539
CUS_5533
Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.
     
 0.512
CUS_5017
Sigma-70, region 4; Identified by match to protein family HMM PF04545; match to protein family HMM PF08281.
  
     0.481
CUS_7991
Conserved domain protein.
  
     0.472
CUS_5821
Hypothetical protein; Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man-Glc) to mannose 1-phosphate (Man1P) and glucose; Belongs to the glycosyl hydrolase 130 family.
       0.447
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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