Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
CUS_5845PSP1 C-terminal domain protein; Identified by match to protein family HMM PF04468. (286 aa)    
Predicted Functional Partners:
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay.
 
  
 0.865
CUS_5846
Hypothetical protein; Identified by glimmer; putative.
       0.773
CUS_5847
Hypothetical protein; Identified by glimmer; putative.
       0.613
CUS_5848
Putative glycerate dehydrogenase; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
    0.613
CUS_5844
Conserved domain protein.
       0.572
pyrK
Putative dihydroorotate oxidase, electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
  
  
 0.489
CUS_6415
Hypothetical protein.
 
    0.422
CUS_6238
Methyltransferase CheR, SAM binding domain protein; Identified by match to protein family HMM PF01739; match to protein family HMM PF03705.
    
 
 0.402
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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