STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5861Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (430 aa)    
Predicted Functional Partners:
CUS_5860
Conserved domain protein.
 
    0.953
CUS_5863
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.918
CUS_5859
Putative lipoprotein.
 
    0.891
CUS_5858
Identified by match to protein family HMM PF03239; match to protein family HMM PF05154.
 
    0.868
CUS_5864
Putative lipoprotein.
 
     0.851
CUS_5871
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
     0.800
CUS_5862
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
    
0.787
CUS_5314
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
     0.768
CUS_5872
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.730
CUS_6860
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  0.660
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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