CUS_5864 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_5864

Putative lipoprotein. (145 aa)

Predicted Functional Partners:

CUS_5863

0.904

CUS_5859

0.863

CUS_5860

0.859

CUS_5862

0.854

CUS_5861

0.851

CUS_5858

0.819

CUS_5871

0.800

CUS_5865

0.780

CUS_5866

0.780

CUS_5314

0.745

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CUS_5314	CUS_5858	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Identified by match to protein family HMM PF03239; match to protein family HMM PF05154.	0.786
CUS_5314	CUS_5859	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Putative lipoprotein.	0.774
CUS_5314	CUS_5860	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Conserved domain protein.	0.806
CUS_5314	CUS_5861	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.768
CUS_5314	CUS_5862	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.765
CUS_5314	CUS_5863	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.813
CUS_5314	CUS_5864	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Putative lipoprotein.	0.745
CUS_5858	CUS_5314	Identified by match to protein family HMM PF03239; match to protein family HMM PF05154.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.786
CUS_5858	CUS_5859	Identified by match to protein family HMM PF03239; match to protein family HMM PF05154.	Putative lipoprotein.	0.982
CUS_5858	CUS_5860	Identified by match to protein family HMM PF03239; match to protein family HMM PF05154.	Conserved domain protein.	0.889
CUS_5858	CUS_5861	Identified by match to protein family HMM PF03239; match to protein family HMM PF05154.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.868
CUS_5858	CUS_5862	Identified by match to protein family HMM PF03239; match to protein family HMM PF05154.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.864
CUS_5858	CUS_5863	Identified by match to protein family HMM PF03239; match to protein family HMM PF05154.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.810
CUS_5858	CUS_5864	Identified by match to protein family HMM PF03239; match to protein family HMM PF05154.	Putative lipoprotein.	0.819
CUS_5858	CUS_5871	Identified by match to protein family HMM PF03239; match to protein family HMM PF05154.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.803
CUS_5859	CUS_5314	Putative lipoprotein.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.774
CUS_5859	CUS_5858	Putative lipoprotein.	Identified by match to protein family HMM PF03239; match to protein family HMM PF05154.	0.982
CUS_5859	CUS_5860	Putative lipoprotein.	Conserved domain protein.	0.908
CUS_5859	CUS_5861	Putative lipoprotein.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.891
CUS_5859	CUS_5862	Putative lipoprotein.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.884