Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CUS_5863 | CUS_5864 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Putative lipoprotein. | 0.904 |
CUS_5863 | CUS_5865 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Conserved domain protein. | 0.727 |
CUS_5863 | CUS_5866 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Hypothetical protein. | 0.727 |
CUS_5863 | CUS_5867 | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910. | 0.420 |
CUS_5864 | CUS_5863 | Putative lipoprotein. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.904 |
CUS_5864 | CUS_5865 | Putative lipoprotein. | Conserved domain protein. | 0.780 |
CUS_5864 | CUS_5866 | Putative lipoprotein. | Hypothetical protein. | 0.780 |
CUS_5864 | CUS_5867 | Putative lipoprotein. | Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910. | 0.458 |
CUS_5864 | CUS_5868 | Putative lipoprotein. | Putative succinate dehydrogenase iron-sulfur subunit; Identified by match to protein family HMM TIGR00384. | 0.413 |
CUS_5865 | CUS_5863 | Conserved domain protein. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.727 |
CUS_5865 | CUS_5864 | Conserved domain protein. | Putative lipoprotein. | 0.780 |
CUS_5865 | CUS_5866 | Conserved domain protein. | Hypothetical protein. | 0.780 |
CUS_5865 | CUS_5867 | Conserved domain protein. | Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910. | 0.458 |
CUS_5866 | CUS_5863 | Hypothetical protein. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.727 |
CUS_5866 | CUS_5864 | Hypothetical protein. | Putative lipoprotein. | 0.780 |
CUS_5866 | CUS_5865 | Hypothetical protein. | Conserved domain protein. | 0.780 |
CUS_5866 | CUS_5867 | Hypothetical protein. | Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910. | 0.502 |
CUS_5866 | CUS_5868 | Hypothetical protein. | Putative succinate dehydrogenase iron-sulfur subunit; Identified by match to protein family HMM TIGR00384. | 0.475 |
CUS_5867 | CUS_5863 | Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910. | ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. | 0.420 |
CUS_5867 | CUS_5864 | Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910. | Putative lipoprotein. | 0.458 |
page 1 of 2