STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5869Putative lipoprotein. (303 aa)    
Predicted Functional Partners:
CUS_5868
Putative succinate dehydrogenase iron-sulfur subunit; Identified by match to protein family HMM TIGR00384.
       0.773
CUS_5870
Conserved domain protein.
       0.773
CUS_7433
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.
  
     0.708
CUS_4480
Hypothetical protein.
  
     0.622
CUS_4523
Hypothetical protein.
  
     0.621
CUS_6799
Nicotinate phosphoribosyltransferase, (NAPRTase) family; Identified by match to protein family HMM PF04095; Belongs to the NAPRTase family.
  
     0.547
CUS_5871
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
       0.527
CUS_5872
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
       0.527
CUS_5867
Putative succinate dehydrogenase flavoprotein subunit; Identified by match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910.
       0.497
CUS_5392
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041.
  
     0.465
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.