STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5883Putative lipoprotein. (563 aa)    
Predicted Functional Partners:
CUS_5881
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.990
CUS_5880
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.907
CUS_7185
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 
 0.828
CUS_5988
Glycosyl hydrolase family 8; Identified by match to protein family HMM PF01270.
 
     0.785
CUS_7151
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.729
CUS_7186
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.729
CUS_7654
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
  
     0.714
CUS_6131
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.689
CUS_6464
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.689
CUS_6469
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.689
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.