Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CUS_5905Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392. (124 aa)    
Predicted Functional Partners:
CUS_5904
Bacitracin ABC transporter, ATP-binding protein BcrA family protein; Identified by match to protein family HMM PF00005.
 
    0.948
CUS_8029
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    0.785
CUS_5902
Putative membrane protein.
       0.779
CUS_5903
Conserved domain protein.
       0.773
CUS_5467
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
  
 0.540
CUS_4511
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
  
  
 0.531
CUS_5900
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
    0.502
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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