STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5933Hypothetical protein. (281 aa)    
Predicted Functional Partners:
CUS_5934
Hypothetical protein.
 
     0.959
CUS_5932
Phage replisome organizer N-terminal domain protein; Identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714.
 
    0.929
CUS_5935
Putative TnpX site-specific recombinase; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.
 
     0.875
CUS_5930
Relaxase/mobilization nuclease domain protein; Identified by match to protein family HMM PF03432.
 
     0.872
CUS_5931
Hypothetical protein.
 
     0.865
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.841
CUS_5085
Conserved domain protein.
 
    0.681
CUS_7901
Hypothetical protein; Identified by glimmer; putative.
  
     0.663
CUS_5944
Conserved domain protein.
 
    0.654
CUS_7463
Hypothetical protein; Identified by glimmer; putative.
  
     0.628
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.